When TR_ScopeCreep is merged, the third Micarya's quest should be relocated from Nunalabbi to Sirrilash. Auctinius should be jailed, and the part with fetching his claymore should be replaced with the requirement to kill the necromancer, either alone before freeing him or together with him after he's freed.
A forcegreet started quest where the camonna tong shake you down for money. The first choice, assuming you want to pay, is "Gold." The dialogue checks how much gold you have and drains the maximum amount, with possible options being 10k, 5k, 1k, 500, 100, or they give it to you for free.
This fix (in progress) will signpost exactly how much you will be losing, as well as capping it at 1k in case people are caught at a bad time.
There are also minor dialogue issues, and a dialogue bug that causes an endless loop if you have exactly 100 gold.
Bthuangthuv has an issue with the exterior rotating doors. Not the main entrance but the hidden entrance - one of the doors turns inward ratehr than outward.
The directions to Massanud in the Roa-Dyr misc quest 'Drinking, Stealing, Ranting' is no longer accurate since the changes to the Aanthiriin exteriors - it describes goes under an arch and most rock arches have been deleted.
On the island directly south of Felms Ithul there are some temple domes floating above the soil.
All vanilla faction questgivers have NoLore. In TR, many of them don't. An ideal solution to that is to go through every questline, check when quests rely on questgivers' generic dialogue (for example, using specific topics for giving directions), and add custom lines to those questgivers.
These are mostly ext and easy scripting bugs. ("Easy scripting" means that even an exter can fix them :) As usual, "f" means "floater", "fff" means "several flaoters", "c" means "casperer".
Some are older, but I've checked that they're still around.